Local Reslice Particle Simulation

Local Reslice Particle Simulation (LRPS) segmentation. More...

Collaboration diagram for Local Reslice Particle Simulation:

Modules
	Derivative Library
	A small derivative library that handles calculating derivatives up to the second order.

Classes
class	volcart::segmentation::LocalResliceSegmentation
	Local Reslice Particle Simulation (LRPS) segmentation. More...
class	volcart::segmentation::EnergyMetrics
	A collection of energy metrics for evaluating a FittedCurve. More...
class	volcart::segmentation::FittedCurve
	Fits a curve to a set of points for resampling. More...
class	volcart::segmentation::IntensityMap
	A class representing the intensity map generated from a row of a matrix, normalized to the range [0, 1]. More...
class	volcart::segmentation::Spline< Scalar, Degree >
	Simple spline wrapper around Eigen::Spline. More...

Typedefs
template<typename Scalar >
using	volcart::segmentation::CubicSpline = Spline< Scalar, 3 >

Functions
template<typename T1 , typename T2 >
std::ostream &	operator<< (std::ostream &s, std::pair< T1, T2 > p)
	Write std::pair to std::ostream. More...
template<typename T >
std::ostream &	operator<< (std::ostream &s, std::vector< T > v)
	Write std::vector to std::ostream. More...
template<typename T1 , typename T2 >
std::vector< std::pair< T1, T2 > >	volcart::segmentation::Zip (const std::vector< T1 > &v1, const std::vector< T2 > &v2)
	Combine two equal-sized vectors into a single vector of paired elements. More...
template<typename T , int Length>
std::pair< std::vector< T >, std::vector< T > >	volcart::segmentation::Unzip (const std::vector< cv::Vec< T, Length > > &vs)
	Separate single vector of paired elements into two vectors of single elements. More...
template<typename T >
std::vector< double >	volcart::segmentation::NormalizeVector (const std::vector< T > &v, double newMin=0, double newMax=1)
	Normalize vector elements to within the range [newMin, newMax]. More...
template<typename T , int Len>
std::vector< cv::Vec< double, Len > >	volcart::segmentation::NormalizeVector (const std::vector< cv::Vec< T, Len > > vs)
	Normalize vector of cv::Vec using cv::norm. More...

VectorMath
std::vector< double >	volcart::segmentation::SquareDiff (const std::vector< Voxel > &v1, const std::vector< Voxel > &v2)
	Computes the difference of Squares on two vectors. More...
double	volcart::segmentation::SumSquareDiff (const std::vector< double > &v1, const std::vector< double > &v2)
	Sums the square differences between two vectors. More...

Detailed Description

Local Reslice Particle Simulation (LRPS) segmentation.

Typedef Documentation

CubicSpline

template<typename Scalar >

using volcart::segmentation::CubicSpline = typedef Spline<Scalar, 3>

A spline of degree three

Definition at line 78 of file Spline.hpp.

Function Documentation

NormalizeVector() [1/2]

template<typename T , int Len>

std::vector< cv::Vec< double, Len > > volcart::segmentation::NormalizeVector

(

const std::vector< cv::Vec< T, Len > >

vs

)

Normalize vector of cv::Vec using cv::norm.

Parameters

vs	Vector to be normalized

Definition at line 168 of file Common.hpp.

NormalizeVector() [2/2]

template<typename T >

std::vector< double > volcart::segmentation::NormalizeVector	(	const std::vector< T > &	v,
		double	newMin = 0,
		double	newMax = 1
	)

Normalize vector elements to within the range [newMin, newMax].

Parameters

v	Vector to be normalized
newMin	Minimum value
newMax	Maximum value

Definition at line 128 of file Common.hpp.

operator<<() [1/2]

template<typename T1 , typename T2 >

std::ostream & operator<<	(	std::ostream &	s,
		std::pair< T1, T2 >	p
	)

Write std::pair to std::ostream.

Pair is formatted as round-bracketed, comma-separated elements. e.g. "(T1, T2)"

Parameters

s	Output stream
p	Input pair

Definition at line 34 of file Common.hpp.

operator<<() [2/2]

template<typename T >

std::ostream & operator<<	(	std::ostream &	s,
		std::vector< T >	v
	)

Write std::vector to std::ostream.

Vectors are formatted as square-bracketed, comma-separated elements. e.g. "[a, b, c, d]"

Parameters

s	Output stream
v	Input vector

Definition at line 51 of file Common.hpp.

SquareDiff()

std::vector< double > volcart::segmentation::SquareDiff	(	const std::vector< Voxel > &	v1,
		const std::vector< Voxel > &	v2
	)

Computes the difference of Squares on two vectors.

Parameters

v1	First vector to square
v2	Second vector to square

SumSquareDiff()

double volcart::segmentation::SumSquareDiff	(	const std::vector< double > &	v1,
		const std::vector< double > &	v2
	)

Sums the square differences between two vectors.

Parameters

v1	First vector to square
v2	Second vector to square

Unzip()

template<typename T , int Length>

std::pair< std::vector< T >, std::vector< T > > volcart::segmentation::Unzip

(

const std::vector< cv::Vec< T, Length > > &

vs

)

Separate single vector of paired elements into two vectors of single elements.

Parameters

vs	Input vector

Definition at line 105 of file Common.hpp.

Zip()

template<typename T1 , typename T2 >

std::vector< std::pair< T1, T2 > > volcart::segmentation::Zip	(	const std::vector< T1 > &	v1,
		const std::vector< T2 > &	v2
	)

Combine two equal-sized vectors into a single vector of paired elements.

Elements from v1 and v2 are combined into std::pair<T1, T2>.

e.g.
v1 = [a, b, c, d]
v2 = [1, 2, 3, 4]
res = [<a, 1>, <b, 2>, <c, 3>, <d, 4>]

Parameters

v1	First vector to be combined
v2	Second vector to be combined

Definition at line 84 of file Common.hpp.